Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs17533770 chr10:69734439 T/C 0 177 25.87 18.2 2.28 KM Plot
PCPG rs17533847 chr10:69746640 T/C 0 177 25.87 18.2 2.28 KM Plot
PCPG rs17534866 chr10:69846916 A/G 0 176 25.67 24.7 2.28 KM Plot
PCPG rs17534907 chr10:69847428 A/G 0 175 25.77 24.7 2.28 KM Plot
PCPG rs17536052 chr20:10644705 G/A 0.000243 173 24.52 27.33 14.28 KM Plot
PCPG rs17552038 chr14:74416945 G/C 4.63E-6 173 25.17 29.7 10.43 KM Plot
PCPG rs17569438 chr2:118680551 A/C 1.6E-5 178 11.65 28.45 25.28 KM Plot
PCPG rs17569842 chr2:118692860 G/A 1.6E-5 178 25.17 30.93 11.65 KM Plot
PCPG rs17573103 chr18:74541594 C/T 1.94E-6 178 25.6 25.17 17.4 KM Plot
PCPG rs17576135 chr13:54143229 T/C 0.000263 175 25.6 19.72 3.17 KM Plot
PCPG rs17576394 chr13:54152079 A/G 0.000227 177 25.67 19.87 3.17 KM Plot
PCPG rs17576443 chr13:54153420 C/G 0.000222 178 25.53 20.17 3.17 KM Plot
PCPG rs17576696 chr13:54162140 T/C 0.000228 177 25.77 20.17 3.17 KM Plot
PCPG rs17576973 chr13:54168328 C/G 0.000228 177 25.77 20.17 3.17 KM Plot
PCPG rs17583921 chr2:118718171 T/C 1.6E-5 178 25.17 30.93 11.65 KM Plot